XML FORMAT ★
SBML
Domain-specific format for biological/biochemical models. Nodes are species, edges are reactions.
Alternative Names: Systems Biology Markup Language
Specification| Feature | SBML |
|---|---|
| Multiple Graphs per Document |  |
| Nodes | |
| Undirected Edges |  |
| Directed Edges | |
| Hyperedges | |
| Mixed-directionality Edges | |
| Parallel Edges | |
| Self-loops | |
| Edges on Edges | |
| Nested Graphs in Nodes | |
| Nested Graphs in Edges | |
| Nested Graphs in Graphs | |
| Node Labels | |
| Edge Labels | |
| Attributes on Nodes | |
| Attributes on Edges | |
| Attributes on Graphs | |
| Typed Edges |  |
Tools(Read & Write)
Read-only Tools
Write-only Tools
Frequently Asked Questions
What is a SBML file?
A SBML file stores a graph — its nodes, edges and attributes — in the SBML format (also: Systems Biology Markup Language). See the feature table above for what it supports.
How do I open a SBML file?
Open it in a graph tool that supports SBML, or convert it to a format your tool reads. With GraphInOut you can convert SBML to GraphML, DOT, Connected JSON and more, right in your browser.
How do I convert a SBML file to another format?
Use the Convert from SBML link above: upload or paste your SBML file (input preset to SBML), choose a target format and download the result — free, no install.